| Presentation | 2015-03-17 A Refinement Method of Biological Morphology Data Division for Parallel Computing of Distributed Parameter Systems Yukio KUWA, Takaya MAEHAMA, Florencio RUSTY PUNZALAN, Hiroaki KUWABARA, Yoshitoshi KUNIEDA, Akira AMANO, |
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| PDF Download Page |  PDF download Page Link |
| Abstract(in Japanese) | (See Japanese page) |
| Abstract(in English) | In this research, we propose a method to improve the simulation speed of MPI parallel program by automatically repartitioning the target simulation space. By using the MPI parallel program, the total simulation time is reduced compared to the sequential program, however, the performance strongly depends on the simulation space partition. In this method, we used the measured computation time of each processing element (PE) to refine the assigned area of each PE which leads to the balanced computational time of all PE. |
| Keyword(in Japanese) | (See Japanese page) |
| Keyword(in English) | biological function simulation / parallel simulation program / CellML / data parallel / data divide |
| Paper # | MBE2014-137,NC2014-88 |
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| Conference Information | |
| Committee | NC |
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| Conference Date | 2015/3/9(1days) |
| Place (in Japanese) | (See Japanese page) |
| Place (in English) | |
| Topics (in Japanese) | (See Japanese page) |
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| Paper Information | |
| Registration To | Neurocomputing (NC) |
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| Language | JPN |
| Title (in Japanese) | (See Japanese page) |
| Sub Title (in Japanese) | (See Japanese page) |
| Title (in English) | A Refinement Method of Biological Morphology Data Division for Parallel Computing of Distributed Parameter Systems |
| Sub Title (in English) | |
| Keyword(1) | biological function simulation |
| Keyword(2) | parallel simulation program |
| Keyword(3) | CellML |
| Keyword(4) | data parallel |
| Keyword(5) | data divide |
| 1st Author's Name | Yukio KUWA |
| 1st Author's Affiliation | Graduate School of Information Science and Engineering, Ritsumeikan University() |
| 2nd Author's Name | Takaya MAEHAMA |
| 2nd Author's Affiliation | Graduate School of Information Science and Engineering, Ritsumeikan University |
| 3rd Author's Name | Florencio RUSTY PUNZALAN |
| 3rd Author's Affiliation | Faculty of Life Science, Ritsumeikan University |
| 4th Author's Name | Hiroaki KUWABARA |
| 4th Author's Affiliation | Faculty of Information Science and Engineering, Ritsumeikan University |
| 5th Author's Name | Yoshitoshi KUNIEDA |
| 5th Author's Affiliation | Faculty of Information Science and Engineering, Ritsumeikan University |
| 6th Author's Name | Akira AMANO |
| 6th Author's Affiliation | Faculty of Life Science, Ritsumeikan University |
| Date | 2015-03-17 |
| Paper # | MBE2014-137,NC2014-88 |
| Volume (vol) | vol.114 |
| Number (no) | 515 |
| Page | pp.pp.- |
| #Pages | 6 |
| Date of Issue | |