| Presentation | 2015-01-26 A Two Phase Scheme for De Novo Genome Assembly based on de Bruijn Graphs for Multiple Short Read Sets Takuto SHIGENOBU, Morikazu NAKAMURA, |
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| PDF Download Page |  PDF download Page Link |
| Abstract(in Japanese) | (See Japanese page) |
| Abstract(in English) | We propose a two phase scheme for de novo genome assembly based on de Bruijn graphs. Given multiple short read sets obtained with different environments but for a same target genome, our scheme applies firstly a de Bruijn Graph based assembly algorithm to each and then perform again the algorithm for the obtained contigs. Moreover, we present a generalized extension of our proposed scheme. Computer experiment shows that our approach performs effectively for some benchmark test data. |
| Keyword(in Japanese) | (See Japanese page) |
| Keyword(in English) | DNA Assembly / de Bruijn Graph / denote asembly / two-phase assembly |
| Paper # | MSS2014-75,SS2014-39 |
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| Conference Information | |
| Committee | MSS |
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| Conference Date | 2015/1/19(1days) |
| Place (in Japanese) | (See Japanese page) |
| Place (in English) | |
| Topics (in Japanese) | (See Japanese page) |
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| Paper Information | |
| Registration To | Mathematical Systems Science and its applications(MSS) |
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| Language | JPN |
| Title (in Japanese) | (See Japanese page) |
| Sub Title (in Japanese) | (See Japanese page) |
| Title (in English) | A Two Phase Scheme for De Novo Genome Assembly based on de Bruijn Graphs for Multiple Short Read Sets |
| Sub Title (in English) | |
| Keyword(1) | DNA Assembly |
| Keyword(2) | de Bruijn Graph |
| Keyword(3) | denote asembly |
| Keyword(4) | two-phase assembly |
| 1st Author's Name | Takuto SHIGENOBU |
| 1st Author's Affiliation | Graduate School of Science and Engineering, University of the Ryukyus() |
| 2nd Author's Name | Morikazu NAKAMURA |
| 2nd Author's Affiliation | Dept. of Information Engineering, University of the Ryukyus |
| Date | 2015-01-26 |
| Paper # | MSS2014-75,SS2014-39 |
| Volume (vol) | vol.114 |
| Number (no) | 415 |
| Page | pp.pp.- |
| #Pages | 5 |
| Date of Issue | |