| Presentation | 2014/6/18 Large-scale Parallelization of Exome Analysis Pipeline on K-computer KENTO AOYAMA, MASANORI KAKUTA, YURI MATSUZAKI, TAKASHI ISHIDA, YUTAKA AKIYAMA, |
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| PDF Download Page | PDF download Page Link |
| Abstract(in Japanese) | (See Japanese page) |
| Abstract(in English) | Exome analysis, which is a method to analyze only protein coding region, has been used in various research fields such as a cancer genome research. Because of the improvement of a high-speed sequencer, demands of effective sequence analysis on large computational environment have been increased. Genomon-exome is a useful pipeline software for analyzing exome data but executable on only general PC clusters. In this study, We attempted to implement the Genomon-exome on the K-computer using a Master-Worker model task distribution framework implemented MPI. We also evaluated the scalability of the pipeline on K-computer. |
| Keyword(in Japanese) | (See Japanese page) |
| Keyword(in English) | K-computer / Exome analysis / Pipeline / Genomon-exome / MPI |
| Paper # | Vol.2014-MPS-98 No.33,Vol.2014-BIO-38 No.33 |
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| Conference Information | |
| Committee | IBISML |
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| Conference Date | 2014/6/18(1days) |
| Place (in Japanese) | (See Japanese page) |
| Place (in English) | |
| Topics (in Japanese) | (See Japanese page) |
| Topics (in English) | |
| Chair | |
| Vice Chair | |
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| Paper Information | |
| Registration To | Information-Based Induction Sciences and Machine Learning (IBISML) |
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| Language | JPN |
| Title (in Japanese) | (See Japanese page) |
| Sub Title (in Japanese) | (See Japanese page) |
| Title (in English) | Large-scale Parallelization of Exome Analysis Pipeline on K-computer |
| Sub Title (in English) | |
| Keyword(1) | K-computer |
| Keyword(2) | Exome analysis |
| Keyword(3) | Pipeline |
| Keyword(4) | Genomon-exome |
| Keyword(5) | MPI |
| 1st Author's Name | KENTO AOYAMA |
| 1st Author's Affiliation | Department of Computer Science, Graduate School of Information Science and Engineering, Tokyo Institute of Technology:Education Academy of Computational Life Sciences, Tokyo Institute of Technology() |
| 2nd Author's Name | MASANORI KAKUTA |
| 2nd Author's Affiliation | Department of Computer Science, Graduate School of Information Science and Engineering, Tokyo Institute of Technology |
| 3rd Author's Name | YURI MATSUZAKI |
| 3rd Author's Affiliation | Education Academy of Computational Life Sciences, Tokyo Institute of Technology |
| 4th Author's Name | TAKASHI ISHIDA |
| 4th Author's Affiliation | Department of Computer Science, Graduate School of Information Science and Engineering, Tokyo Institute of Technology |
| 5th Author's Name | YUTAKA AKIYAMA |
| 5th Author's Affiliation | Department of Computer Science, Graduate School of Information Science and Engineering, Tokyo Institute of Technology:Education Academy of Computational Life Sciences, Tokyo Institute of Technology |
| Date | 2014/6/18 |
| Paper # | Vol.2014-MPS-98 No.33,Vol.2014-BIO-38 No.33 |
| Volume (vol) | vol.114 |
| Number (no) | 105 |
| Page | pp.pp.- |
| #Pages | 7 |
| Date of Issue | |