| Presentation | 2013/6/20 Speed-up of homology search tool using clustering of subsequences in database SHUJI SUZUKI, TAKASHI ISHIDA, YUTAKA AKIYAMA, |
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| PDF Download Page | PDF download Page Link |
| Abstract(in Japanese) | (See Japanese page) |
| Abstract(in English) | In metagenome analysis, DNA sequences are transformed into amino acid sequences before homology search. However, next generation sequencers became to produce larger data than previous sequencers. And then it takes more time to analyze data from next generation sequencers. Thus, we have made clusters of subsequences from database before homology search and search queries from the representations in clusters to search efficiently. |
| Keyword(in Japanese) | (See Japanese page) |
| Keyword(in English) | sequence homology search / sequence clustering / metagenome analysis |
| Paper # | Vol.2013-BIO-34 No.14 |
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| Conference Information | |
| Committee | NC |
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| Conference Date | 2013/6/20(1days) |
| Place (in Japanese) | (See Japanese page) |
| Place (in English) | |
| Topics (in Japanese) | (See Japanese page) |
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| Paper Information | |
| Registration To | Neurocomputing (NC) |
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| Language | JPN |
| Title (in Japanese) | (See Japanese page) |
| Sub Title (in Japanese) | (See Japanese page) |
| Title (in English) | Speed-up of homology search tool using clustering of subsequences in database |
| Sub Title (in English) | |
| Keyword(1) | sequence homology search |
| Keyword(2) | sequence clustering |
| Keyword(3) | metagenome analysis |
| 1st Author's Name | SHUJI SUZUKI |
| 1st Author's Affiliation | Graduate School of Information Science and Engineering, Tokyo Institute of Technology() |
| 2nd Author's Name | TAKASHI ISHIDA |
| 2nd Author's Affiliation | Graduate School of Information Science and Engineering, Tokyo Institute of Technology |
| 3rd Author's Name | YUTAKA AKIYAMA |
| 3rd Author's Affiliation | Graduate School of Information Science and Engineering, Tokyo Institute of Technology |
| Date | 2013/6/20 |
| Paper # | Vol.2013-BIO-34 No.14 |
| Volume (vol) | vol.113 |
| Number (no) | 111 |
| Page | pp.pp.- |
| #Pages | 7 |
| Date of Issue | |