Presentation	2013-05-20 FPGA Acceleration of Short Read Mapping Yoko SOGABE, Tsutomu MARUYAMA,
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Abstract(in English)	The rapid development of Next Generation Sequencing has enabled to generate more than 100 billion base pairs per day from one machine. The produced data are randomly fragmented DNA base pair strings, called short reads. Next step for the genetic analysis is the short read mapping, which determines the location of the short reads in the reference genomes. The traditional software tools for the short read mapping are slower than NGS throughput. In this paper, we propose a scalable FPGA system based on the hash index method.
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Keyword(in English)	FPGA / Bioinformatics / Short Read Mapping / Application Acceleration
Paper #	RECONF2013-4
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Committee	RECONF
Conference Date	2013/5/13(1days)
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Registration To	Reconfigurable Systems (RECONF)
Language	JPN
Title (in Japanese)	(See Japanese page)
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Title (in English)	FPGA Acceleration of Short Read Mapping
Sub Title (in English)
Keyword(1)	FPGA
Keyword(2)	Bioinformatics
Keyword(3)	Short Read Mapping
Keyword(4)	Application Acceleration
1st Author's Name	Yoko SOGABE
1st Author's Affiliation	System and Information Engineering, University of Tsukuba()
2nd Author's Name	Tsutomu MARUYAMA
2nd Author's Affiliation	System and Information Engineering, University of Tsukuba
Date	2013-05-20
Paper #	RECONF2013-4
Volume (vol)	vol.113
Number (no)	52
Page	pp.pp.-
#Pages	6
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