| Presentation | 2011/11/10 Proposal of a method to determine retention-free firing frequencies in cycle-contained Petri net model of signaling pathway Yuki MURAKAMI, Qi-Wei GE, Hiroshi MATSUNO, |
|---|---|
| PDF Download Page | PDF download Page Link |
| Abstract(in Japanese) | (See Japanese page) |
| Abstract(in English) | In this paper, we discuss the condition that must be satisfied for cycle-contained Petri net model of signaling pathway to be retention-free Petri net. Retention-free Petri net is a timed Petri net such that total input token-flow and total output token-flow are equivalent at any place. Transmission of the sinal in signaling pathway is mainly worked by phosphorylation of the protein by enzyme that plays a great role in signaling pathway. In Petri net, an enzyme is expressed by a self-loop in order to act as a catalyst to the work which phosphorylates protein. Cyclic structure is loop structure and self-loop is the minimum one. For Petri net model including cyclic structure, we conduct the conditions of retention-free Petri net. |
| Keyword(in Japanese) | (See Japanese page) |
| Keyword(in English) | signaling pathways / timed Petri net / retention-free Petri net / cyclic structure / self loop |
| Paper # | MSS2011-45,CAS2011-76 |
| Date of Issue |
| Conference Information | |
| Committee | MSS |
|---|---|
| Conference Date | 2011/11/10(1days) |
| Place (in Japanese) | (See Japanese page) |
| Place (in English) | |
| Topics (in Japanese) | (See Japanese page) |
| Topics (in English) | |
| Chair | |
| Vice Chair | |
| Secretary | |
| Assistant | |
| Paper Information | |
| Registration To | Mathematical Systems Science and its applications(MSS) |
|---|---|
| Language | JPN |
| Title (in Japanese) | (See Japanese page) |
| Sub Title (in Japanese) | (See Japanese page) |
| Title (in English) | Proposal of a method to determine retention-free firing frequencies in cycle-contained Petri net model of signaling pathway |
| Sub Title (in English) | |
| Keyword(1) | signaling pathways |
| Keyword(2) | timed Petri net |
| Keyword(3) | retention-free Petri net |
| Keyword(4) | cyclic structure |
| Keyword(5) | self loop |
| 1st Author's Name | Yuki MURAKAMI |
| 1st Author's Affiliation | Graduate School of Science and Engineering, Yamaguchi University() |
| 2nd Author's Name | Qi-Wei GE |
| 2nd Author's Affiliation | Faculty of Education, Yamaguchi University |
| 3rd Author's Name | Hiroshi MATSUNO |
| 3rd Author's Affiliation | Graduate School of Science and Engineering, Yamaguchi University |
| Date | 2011/11/10 |
| Paper # | MSS2011-45,CAS2011-76 |
| Volume (vol) | vol.111 |
| Number (no) | 294 |
| Page | pp.pp.- |
| #Pages | 6 |
| Date of Issue | |