| Presentation | 2009-08-03 A model of bipartite graphs for protein domain networks Tomoshiro Ochiai, Jose Nacher, Morihiro Hayashida, Tatsuya Akutsu, |
|---|---|
| PDF Download Page |  PDF download Page Link |
| Abstract(in Japanese) | (See Japanese page) |
| Abstract(in English) | Protein networks perform a large variety of essential functions in the cells of living organisms. Here we analyze the degree distribution of kinds of domains network in H. Sapiens and A. Thaliana organisms. The results show that while (a) the number of domain types shared by k proteins exhibits a power-law distribution, (b) the number of proteins composed of k types of domains decays as an exponential distribution. These empirical findings encourage us to develop an evolutionary network model to explain the emergence of this mixing of (a) power-law and (b) exponential distributions. Our theoretical and computational results show that this network model requires (1) growth process and (2) copy mechanism. |
| Keyword(in Japanese) | (See Japanese page) |
| Keyword(in English) | Scale free network / Bipartite graphs / Protein networks |
| Paper # | NLP2009-50 |
| Date of Issue |
| Conference Information | |
| Committee | NLP |
|---|---|
| Conference Date | 2009/7/27(1days) |
| Place (in Japanese) | (See Japanese page) |
| Place (in English) | |
| Topics (in Japanese) | (See Japanese page) |
| Topics (in English) | |
| Chair | |
| Vice Chair | |
| Secretary | |
| Assistant | |
| Paper Information | |
| Registration To | Nonlinear Problems (NLP) |
|---|---|
| Language | ENG |
| Title (in Japanese) | (See Japanese page) |
| Sub Title (in Japanese) | (See Japanese page) |
| Title (in English) | A model of bipartite graphs for protein domain networks |
| Sub Title (in English) | |
| Keyword(1) | Scale free network |
| Keyword(2) | Bipartite graphs |
| Keyword(3) | Protein networks |
| 1st Author's Name | Tomoshiro Ochiai |
| 1st Author's Affiliation | Faculty of Engineering, Toyama Prefectural University() |
| 2nd Author's Name | Jose Nacher |
| 2nd Author's Affiliation | Department of Complex Systems, Future University-Hakodate |
| 3rd Author's Name | Morihiro Hayashida |
| 3rd Author's Affiliation | Bioinformatics Center, Institute for Chemical Research, Kyoto University |
| 4th Author's Name | Tatsuya Akutsu |
| 4th Author's Affiliation | Bioinformatics Center, Institute for Chemical Research, Kyoto University |
| Date | 2009-08-03 |
| Paper # | NLP2009-50 |
| Volume (vol) | vol.109 |
| Number (no) | 167 |
| Page | pp.pp.- |
| #Pages | 3 |
| Date of Issue | |