Presentation | 2009-05-14 Performance evaluation of an auto-generation algorithm of hardware modules for an FPGA-based general-purpose biochemical simulator Tomonori OOYA, Hideki YAMADA, Tomoya ISHIMORI, Yuichiro SHIBATA, Yasunori OSANA, Masato YOSHIMI, Yuri NISHIKAWA, Hideharu AMANO, Akira FUNAHASHI, Noriko HIROI, Kiyoshi OGURI, |
---|---|
PDF Download Page | PDF download Page Link |
Abstract(in Japanese) | (See Japanese page) |
Abstract(in English) | One of the obvious advantages of FPGA-based reconfigurable computing is customizability of a tradeoff point between performance and hardware costs. However, this tradeoff has rarely been discussed in a whole application level, which is the most important view for application users. This paper presents empirical evaluation of a hardware module sharing technique which can shift a tradeoff point of area and performance on an FPGA-based biochemical simulator. The practical biochemical simulation results are discussed in terms of hardware costs, simulation throughput, parallelism extracted in simulation hardware, and data transfer overheads. |
Keyword(in Japanese) | (See Japanese page) |
Keyword(in English) | biochemical simulation / common subgraph / reaction rate equation / FPGA / data transfer / trade-off |
Paper # | RECONF2009-7 |
Date of Issue |
Conference Information | |
Committee | RECONF |
---|---|
Conference Date | 2009/5/7(1days) |
Place (in Japanese) | (See Japanese page) |
Place (in English) | |
Topics (in Japanese) | (See Japanese page) |
Topics (in English) | |
Chair | |
Vice Chair | |
Secretary | |
Assistant |
Paper Information | |
Registration To | Reconfigurable Systems (RECONF) |
---|---|
Language | JPN |
Title (in Japanese) | (See Japanese page) |
Sub Title (in Japanese) | (See Japanese page) |
Title (in English) | Performance evaluation of an auto-generation algorithm of hardware modules for an FPGA-based general-purpose biochemical simulator |
Sub Title (in English) | |
Keyword(1) | biochemical simulation |
Keyword(2) | common subgraph |
Keyword(3) | reaction rate equation |
Keyword(4) | FPGA |
Keyword(5) | data transfer |
Keyword(6) | trade-off |
1st Author's Name | Tomonori OOYA |
1st Author's Affiliation | Nagasaki University() |
2nd Author's Name | Hideki YAMADA |
2nd Author's Affiliation | Nagasaki University |
3rd Author's Name | Tomoya ISHIMORI |
3rd Author's Affiliation | Nagasaki University |
4th Author's Name | Yuichiro SHIBATA |
4th Author's Affiliation | Nagasaki University |
5th Author's Name | Yasunori OSANA |
5th Author's Affiliation | Seikei University |
6th Author's Name | Masato YOSHIMI |
6th Author's Affiliation | Doshisha University |
7th Author's Name | Yuri NISHIKAWA |
7th Author's Affiliation | Keio University |
8th Author's Name | Hideharu AMANO |
8th Author's Affiliation | Keio University |
9th Author's Name | Akira FUNAHASHI |
9th Author's Affiliation | Keio University |
10th Author's Name | Noriko HIROI |
10th Author's Affiliation | Keio University |
11th Author's Name | Kiyoshi OGURI |
11th Author's Affiliation | Nagasaki University |
Date | 2009-05-14 |
Paper # | RECONF2009-7 |
Volume (vol) | vol.109 |
Number (no) | 26 |
Page | pp.pp.- |
#Pages | 6 |
Date of Issue |