| Presentation | 2009-05-14 Performance evaluation of an auto-generation algorithm of hardware modules for an FPGA-based general-purpose biochemical simulator Tomonori OOYA, Hideki YAMADA, Tomoya ISHIMORI, Yuichiro SHIBATA, Yasunori OSANA, Masato YOSHIMI, Yuri NISHIKAWA, Hideharu AMANO, Akira FUNAHASHI, Noriko HIROI, Kiyoshi OGURI, |
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| PDF Download Page |  PDF download Page Link |
| Abstract(in Japanese) | (See Japanese page) |
| Abstract(in English) | One of the obvious advantages of FPGA-based reconfigurable computing is customizability of a tradeoff point between performance and hardware costs. However, this tradeoff has rarely been discussed in a whole application level, which is the most important view for application users. This paper presents empirical evaluation of a hardware module sharing technique which can shift a tradeoff point of area and performance on an FPGA-based biochemical simulator. The practical biochemical simulation results are discussed in terms of hardware costs, simulation throughput, parallelism extracted in simulation hardware, and data transfer overheads. |
| Keyword(in Japanese) | (See Japanese page) |
| Keyword(in English) | biochemical simulation / common subgraph / reaction rate equation / FPGA / data transfer / trade-off |
| Paper # | RECONF2009-7 |
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| Conference Information | |
| Committee | RECONF |
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| Conference Date | 2009/5/7(1days) |
| Place (in Japanese) | (See Japanese page) |
| Place (in English) | |
| Topics (in Japanese) | (See Japanese page) |
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| Paper Information | |
| Registration To | Reconfigurable Systems (RECONF) |
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| Language | JPN |
| Title (in Japanese) | (See Japanese page) |
| Sub Title (in Japanese) | (See Japanese page) |
| Title (in English) | Performance evaluation of an auto-generation algorithm of hardware modules for an FPGA-based general-purpose biochemical simulator |
| Sub Title (in English) | |
| Keyword(1) | biochemical simulation |
| Keyword(2) | common subgraph |
| Keyword(3) | reaction rate equation |
| Keyword(4) | FPGA |
| Keyword(5) | data transfer |
| Keyword(6) | trade-off |
| 1st Author's Name | Tomonori OOYA |
| 1st Author's Affiliation | Nagasaki University() |
| 2nd Author's Name | Hideki YAMADA |
| 2nd Author's Affiliation | Nagasaki University |
| 3rd Author's Name | Tomoya ISHIMORI |
| 3rd Author's Affiliation | Nagasaki University |
| 4th Author's Name | Yuichiro SHIBATA |
| 4th Author's Affiliation | Nagasaki University |
| 5th Author's Name | Yasunori OSANA |
| 5th Author's Affiliation | Seikei University |
| 6th Author's Name | Masato YOSHIMI |
| 6th Author's Affiliation | Doshisha University |
| 7th Author's Name | Yuri NISHIKAWA |
| 7th Author's Affiliation | Keio University |
| 8th Author's Name | Hideharu AMANO |
| 8th Author's Affiliation | Keio University |
| 9th Author's Name | Akira FUNAHASHI |
| 9th Author's Affiliation | Keio University |
| 10th Author's Name | Noriko HIROI |
| 10th Author's Affiliation | Keio University |
| 11th Author's Name | Kiyoshi OGURI |
| 11th Author's Affiliation | Nagasaki University |
| Date | 2009-05-14 |
| Paper # | RECONF2009-7 |
| Volume (vol) | vol.109 |
| Number (no) | 26 |
| Page | pp.pp.- |
| #Pages | 6 |
| Date of Issue | |