| Presentation | 2008-09-25 An automatic combine algorithm of arithmetic pipelines for an FPGA-based biochemical simulator focused on similarities of rate law functions Hideki YAMADA, Tomoya ISIMORI, Yuichiro SHIBATA, Yasunori OSANA, Masato YOSHIMI, Yuri NISHIKAWA, Hideharu AMANO, Akira FUNAHASHI, Noriko HIROI, Kiyoshi OGURI, |
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| PDF Download Page |  PDF download Page Link |
| Abstract(in Japanese) | (See Japanese page) |
| Abstract(in English) | This paper proposes a method which combines some common subgraphs in data flow graphs for rate law functions appeared in biochemical models to generate a shared hardware module for an efficient FPGA based biochemical simulator. The evaluation results reveal that this combining algorithm reduces hardware amount by up to 88.13% at the cost of 23.43% throughput degradation. |
| Keyword(in Japanese) | (See Japanese page) |
| Keyword(in English) | biochemical simulation / arithmetic scheduling / common subgraph / rate law function / FPGA |
| Paper # | RECONF2008-26 |
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| Conference Information | |
| Committee | RECONF |
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| Conference Date | 2008/9/18(1days) |
| Place (in Japanese) | (See Japanese page) |
| Place (in English) | |
| Topics (in Japanese) | (See Japanese page) |
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| Paper Information | |
| Registration To | Reconfigurable Systems (RECONF) |
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| Language | JPN |
| Title (in Japanese) | (See Japanese page) |
| Sub Title (in Japanese) | (See Japanese page) |
| Title (in English) | An automatic combine algorithm of arithmetic pipelines for an FPGA-based biochemical simulator focused on similarities of rate law functions |
| Sub Title (in English) | |
| Keyword(1) | biochemical simulation |
| Keyword(2) | arithmetic scheduling |
| Keyword(3) | common subgraph |
| Keyword(4) | rate law function |
| Keyword(5) | FPGA |
| 1st Author's Name | Hideki YAMADA |
| 1st Author's Affiliation | Faculty of Engineering, Nagasaki University() |
| 2nd Author's Name | Tomoya ISIMORI |
| 2nd Author's Affiliation | Faculty of Engineering, Nagasaki University |
| 3rd Author's Name | Yuichiro SHIBATA |
| 3rd Author's Affiliation | Faculty of Engineering, Nagasaki University |
| 4th Author's Name | Yasunori OSANA |
| 4th Author's Affiliation | Faculty of Science and Technology, Keio University |
| 5th Author's Name | Masato YOSHIMI |
| 5th Author's Affiliation | Faculty of Science and Technology, Keio University |
| 6th Author's Name | Yuri NISHIKAWA |
| 6th Author's Affiliation | Faculty of Science and Technology, Keio University |
| 7th Author's Name | Hideharu AMANO |
| 7th Author's Affiliation | Faculty of Science and Technology, Keio University |
| 8th Author's Name | Akira FUNAHASHI |
| 8th Author's Affiliation | Faculty of Science and Technology, Keio University |
| 9th Author's Name | Noriko HIROI |
| 9th Author's Affiliation | EMBL-EBI, Thornton group Wellcome Trust Genome Campus |
| 10th Author's Name | Kiyoshi OGURI |
| 10th Author's Affiliation | Faculty of Engineering, Nagasaki University |
| Date | 2008-09-25 |
| Paper # | RECONF2008-26 |
| Volume (vol) | vol.108 |
| Number (no) | 220 |
| Page | pp.pp.- |
| #Pages | 6 |
| Date of Issue | |