| Presentation | 2008-05-23 Pipeline Scheduling with Input Port Constraints for an FPGA-based Biochemical Simulator Tomoya ISHIMORI, Hideki YAMADA, Yuichiro SHIBATA, Yasunori OSANA, Masato YOSHIMI, Yuri NISHIKAWA, Toshinori KOJIMA, Hideharu AMANO, Akira FUNAHASHI, Noriko HIROI, Kiyoshi OGURI, |
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| PDF Download Page |  PDF download Page Link |
| Abstract(in Japanese) | (See Japanese page) |
| Abstract(in English) | High-throughput circuit design under device resource constraints is important for FPGA-based biochemical simulators. In this papers, we propose novel arithmetic pipeline scheduling techniques which effectively reduce hardware costs under given input bandwidth constraints. By assigning data-input timing based on an appropriate priority, arithmetic scheduling process is hardly affected by input bandwidth constraints. Evaluation results revealed that our method reduces hardware costs by 7.6% on average compared to the conventional ALAP scheduling. |
| Keyword(in Japanese) | (See Japanese page) |
| Keyword(in English) | biochemical simulation / arithmetic scheduling / FPGA |
| Paper # | RECONF2008-20 |
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| Committee | RECONF |
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| Conference Date | 2008/5/15(1days) |
| Place (in Japanese) | (See Japanese page) |
| Place (in English) | |
| Topics (in Japanese) | (See Japanese page) |
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| Paper Information | |
| Registration To | Reconfigurable Systems (RECONF) |
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| Language | JPN |
| Title (in Japanese) | (See Japanese page) |
| Sub Title (in Japanese) | (See Japanese page) |
| Title (in English) | Pipeline Scheduling with Input Port Constraints for an FPGA-based Biochemical Simulator |
| Sub Title (in English) | |
| Keyword(1) | biochemical simulation |
| Keyword(2) | arithmetic scheduling |
| Keyword(3) | FPGA |
| 1st Author's Name | Tomoya ISHIMORI |
| 1st Author's Affiliation | Faculty of Engineering, Nagasaki University() |
| 2nd Author's Name | Hideki YAMADA |
| 2nd Author's Affiliation | Faculty of Engineering, Nagasaki University |
| 3rd Author's Name | Yuichiro SHIBATA |
| 3rd Author's Affiliation | Faculty of Engineering, Nagasaki University |
| 4th Author's Name | Yasunori OSANA |
| 4th Author's Affiliation | Faculty of Science and Technology, Keio University |
| 5th Author's Name | Masato YOSHIMI |
| 5th Author's Affiliation | Faculty of Science and Technology, Keio University |
| 6th Author's Name | Yuri NISHIKAWA |
| 6th Author's Affiliation | Faculty of Science and Technology, Keio University |
| 7th Author's Name | Toshinori KOJIMA |
| 7th Author's Affiliation | Faculty of Science and Technology, Keio University |
| 8th Author's Name | Hideharu AMANO |
| 8th Author's Affiliation | Faculty of Science and Technology, Keio University |
| 9th Author's Name | Akira FUNAHASHI |
| 9th Author's Affiliation | Faculty of Science and Technology, Keio University |
| 10th Author's Name | Noriko HIROI |
| 10th Author's Affiliation | EMBL-EBI, Thornton group Wellcome Trust Genome Campus |
| 11th Author's Name | Kiyoshi OGURI |
| 11th Author's Affiliation | Faculty of Engineering, Nagasaki University |
| Date | 2008-05-23 |
| Paper # | RECONF2008-20 |
| Volume (vol) | vol.108 |
| Number (no) | 48 |
| Page | pp.pp.- |
| #Pages | 6 |
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