| Presentation | 2006-01-18 A Stochastic Biochemical Simulator with a Data-transfer Network on an FPGA Masato YOSHIMI, Yasunori OSANA, Yow IWAOKA, Yuri NISHIKAWA, Toshinori KOJIMA, Akira FUNAHASHI, Noriko HIROI, Yuichiro SHIBATA, Naoki IWANAGA, Hiroaki KITANO, Hideharu AMANO, |
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| PDF Download Page |  PDF download Page Link |
| Abstract(in Japanese) | (See Japanese page) |
| Abstract(in English) | A high-perfomance biochemical simulator using a reconfigurable system draws attention as a low-cost solution from biologists. Especially, stochastic simulation algorithms (SSAs) are widely known to be rigorous, but also to be time-consuming for advanced microprocessors due to its algorithm characteristics. In this research report, a prototype of data-transfer network based on SSA-NRM(Next Reaction Method) simulator is designed and evaluated with the most basic configuration. The evaluation result indicates high-throughput capability for large-scale biochemical systems. |
| Keyword(in Japanese) | (See Japanese page) |
| Keyword(in English) | Data-transfer network / FPGA / Stochastic biochemical simulation |
| Paper # | VLD2005-105,CPSY2005-61,RECONF2005-94 |
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| Conference Information | |
| Committee | RECONF |
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| Conference Date | 2006/1/11(1days) |
| Place (in Japanese) | (See Japanese page) |
| Place (in English) | |
| Topics (in Japanese) | (See Japanese page) |
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| Paper Information | |
| Registration To | Reconfigurable Systems (RECONF) |
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| Language | JPN |
| Title (in Japanese) | (See Japanese page) |
| Sub Title (in Japanese) | (See Japanese page) |
| Title (in English) | A Stochastic Biochemical Simulator with a Data-transfer Network on an FPGA |
| Sub Title (in English) | |
| Keyword(1) | Data-transfer network |
| Keyword(2) | FPGA |
| Keyword(3) | Stochastic biochemical simulation |
| 1st Author's Name | Masato YOSHIMI |
| 1st Author's Affiliation | Graduate School of Science and Technology, Keio University() |
| 2nd Author's Name | Yasunori OSANA |
| 2nd Author's Affiliation | Graduate School of Science and Technology, Keio University |
| 3rd Author's Name | Yow IWAOKA |
| 3rd Author's Affiliation | Graduate School of Science and Technology, Keio University |
| 4th Author's Name | Yuri NISHIKAWA |
| 4th Author's Affiliation | Faculty of Science and Technology, Keio University |
| 5th Author's Name | Toshinori KOJIMA |
| 5th Author's Affiliation | Faculty of Science and Technology, Keio University |
| 6th Author's Name | Akira FUNAHASHI |
| 6th Author's Affiliation | Kitano Symbiotic Systems Project, ERATO-SORST, Japan Science and Technology Agency |
| 7th Author's Name | Noriko HIROI |
| 7th Author's Affiliation | Kitano Symbiotic Systems Project, ERATO-SORST, Japan Science and Technology Agency |
| 8th Author's Name | Yuichiro SHIBATA |
| 8th Author's Affiliation | Dept. of Computer and Information Sciences, Nagasaki University |
| 9th Author's Name | Naoki IWANAGA |
| 9th Author's Affiliation | Dept. of Computer and Information Sciences, Nagasaki University |
| 10th Author's Name | Hiroaki KITANO |
| 10th Author's Affiliation | Kitano Symbiotic Systems Project, ERATO-SORST, Japan Science and Technology Agency |
| 11th Author's Name | Hideharu AMANO |
| 11th Author's Affiliation | Graduate School of Science and Technology, Keio University |
| Date | 2006-01-18 |
| Paper # | VLD2005-105,CPSY2005-61,RECONF2005-94 |
| Volume (vol) | vol.105 |
| Number (no) | 518 |
| Page | pp.pp.- |
| #Pages | 6 |
| Date of Issue | |