| Presentation | 2006-01-12 Comparison with Base Expression to Identify Exon-Intron Boundaries of Gene by Support Vector Machine Yusuke TOMINARI, Yuji FUJITA, Kunihito YAMAMORI, Ikuo YOSHIHARA, |
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| Abstract(in Japanese) | (See Japanese page) |
| Abstract(in English) | In this report, we propose three-tuple encoding to identify Exon-Intron boundaries of gene by Support Vector Machine. In conventional experiments by Genetic Programing or Neural Network, they used 2-bits or 4-bits binary encoding to express the bases. We focuced on that only the euclidean distance is used in Support Vector Machine. We propose three-tuple encoding which the three-tuple encoding has some features that the euclidean distance of between bases is equal, and dimension of a code is small. We compared with boundary identification rate among three kinds of based expression. The identification rate of three-tuple expression was high as well as one of 4-bit. |
| Keyword(in Japanese) | (See Japanese page) |
| Keyword(in English) | Support Vector Machine / Genome / Exon-Intron / Encoding |
| Paper # | CAS2005-84 |
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| Conference Information | |
| Committee | CAS |
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| Conference Date | 2006/1/5(1days) |
| Place (in Japanese) | (See Japanese page) |
| Place (in English) | |
| Topics (in Japanese) | (See Japanese page) |
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| Paper Information | |
| Registration To | Circuits and Systems (CAS) |
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| Language | JPN |
| Title (in Japanese) | (See Japanese page) |
| Sub Title (in Japanese) | (See Japanese page) |
| Title (in English) | Comparison with Base Expression to Identify Exon-Intron Boundaries of Gene by Support Vector Machine |
| Sub Title (in English) | |
| Keyword(1) | Support Vector Machine |
| Keyword(2) | Genome |
| Keyword(3) | Exon-Intron |
| Keyword(4) | Encoding |
| 1st Author's Name | Yusuke TOMINARI |
| 1st Author's Affiliation | Graduate School of Miyazaki, Miyazaki Univercity() |
| 2nd Author's Name | Yuji FUJITA |
| 2nd Author's Affiliation | Graduate School of Miyazaki, Miyazaki Univercity |
| 3rd Author's Name | Kunihito YAMAMORI |
| 3rd Author's Affiliation | Facutly of Engineering, Miyazaki Univercity |
| 4th Author's Name | Ikuo YOSHIHARA |
| 4th Author's Affiliation | Facutly of Engineering, Miyazaki Univercity |
| Date | 2006-01-12 |
| Paper # | CAS2005-84 |
| Volume (vol) | vol.105 |
| Number (no) | 503 |
| Page | pp.pp.- |
| #Pages | 6 |
| Date of Issue | |