| Presentation | 2005-09-15 The Control Mechanism of an FPGA-Based Biochemical Simulator ReCSiP Yasunori OSANA, Masato YOSHIMI, Yow IWAOKA, Toshinori KOJIMA, Yuri NISHIKAWA, Akira FUNAHASHI, Noriko HIROI, Yuichiro SHIBATA, Naoki IWANAGA, Hiroaki KITANO, Hideharu AMANO, |
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| Abstract(in Japanese) | (See Japanese page) |
| Abstract(in English) | Mathematical modeling and simulations of biochemical systems are now essential for biological researches. However, modern microprocessors can't provide enough throughput for parameter fitting of the models, or simulation of large scale systems. ReCSiP is an accelerated biochemical simulator on an FPGA, and it's now in the final stage to be released as an "system" which includes from front-end GUI tools to simulatior modules on FP-GAs. In this report, the control mechanism of ReCSiP is described, then approarches to achieve higher throughput per area ratio are discussed. |
| Keyword(in Japanese) | (See Japanese page) |
| Keyword(in English) | FPGA / ReCSiP / biochemical simulations / control mechanism |
| Paper # | RECONF2005-39 |
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| Conference Information | |
| Committee | RECONF |
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| Conference Date | 2005/9/8(1days) |
| Place (in Japanese) | (See Japanese page) |
| Place (in English) | |
| Topics (in Japanese) | (See Japanese page) |
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| Paper Information | |
| Registration To | Reconfigurable Systems (RECONF) |
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| Language | JPN |
| Title (in Japanese) | (See Japanese page) |
| Sub Title (in Japanese) | (See Japanese page) |
| Title (in English) | The Control Mechanism of an FPGA-Based Biochemical Simulator ReCSiP |
| Sub Title (in English) | |
| Keyword(1) | FPGA |
| Keyword(2) | ReCSiP |
| Keyword(3) | biochemical simulations |
| Keyword(4) | control mechanism |
| 1st Author's Name | Yasunori OSANA |
| 1st Author's Affiliation | Graduate School of Science and Technology, Keio University() |
| 2nd Author's Name | Masato YOSHIMI |
| 2nd Author's Affiliation | Graduate School of Science and Technology, Keio University |
| 3rd Author's Name | Yow IWAOKA |
| 3rd Author's Affiliation | Graduate School of Science and Technology, Keio University |
| 4th Author's Name | Toshinori KOJIMA |
| 4th Author's Affiliation | Department of Information and Computer Science, Faculty of Science and Technology, Keio University |
| 5th Author's Name | Yuri NISHIKAWA |
| 5th Author's Affiliation | Department of Information and Computer Science, Faculty of Science and Technology, Keio University |
| 6th Author's Name | Akira FUNAHASHI |
| 6th Author's Affiliation | Kitano Symbiotic Project, ERATO-SORST, Japan Science and Technology Corporation |
| 7th Author's Name | Noriko HIROI |
| 7th Author's Affiliation | Kitano Symbiotic Project, ERATO-SORST, Japan Science and Technology Corporation |
| 8th Author's Name | Yuichiro SHIBATA |
| 8th Author's Affiliation | Department of Computer and Information Scienecs, Nagasaki University |
| 9th Author's Name | Naoki IWANAGA |
| 9th Author's Affiliation | Department of Computer and Information Scienecs, Nagasaki University |
| 10th Author's Name | Hiroaki KITANO |
| 10th Author's Affiliation | Kitano Symbiotic Project, ERATO-SORST, Japan Science and Technology Corporation |
| 11th Author's Name | Hideharu AMANO |
| 11th Author's Affiliation | Graduate School of Science and Technology, Keio University |
| Date | 2005-09-15 |
| Paper # | RECONF2005-39 |
| Volume (vol) | vol.105 |
| Number (no) | 287 |
| Page | pp.pp.- |
| #Pages | 6 |
| Date of Issue | |