| Presentation | 2005-05-12 Implementation and Evaluation of Numerical Integrators on ReCSiP Yasunori OSANA, Masato YOSHIMI, Yow IWAOKA, Akira FUNAHASHI, Noriko HIROI, Yuichiro SHIBATA, Naoki IWANAGA, Hiroaki KITANO, Hideharu AMANO, |
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| Abstract(in Japanese) | (See Japanese page) |
| Abstract(in English) | Mathematical modeling and simulation of the cellular systems are now essential in biological researches. However, computer systems with much higher throughput are required since modern high-performance systems can't provide enough throughput on these problems. ReCSiP is an FPGA-based biochemical simulator, which achieves high throughput by statically scheduled deep pipelines. In this research report, the implementation of numerical integration module based on Heun's method, which is more stable than Euler's method. As the result, the new integration module achieved almost same area and frequency than the previous implementation based on Euler's method. |
| Keyword(in Japanese) | (See Japanese page) |
| Keyword(in English) | Biochemical Simulaton / Ordinary Differential Equations / Heun's Method / FPGA |
| Paper # | RECONF2005-9 |
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| Conference Information | |
| Committee | RECONF |
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| Conference Date | 2005/5/5(1days) |
| Place (in Japanese) | (See Japanese page) |
| Place (in English) | |
| Topics (in Japanese) | (See Japanese page) |
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| Paper Information | |
| Registration To | Reconfigurable Systems (RECONF) |
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| Language | JPN |
| Title (in Japanese) | (See Japanese page) |
| Sub Title (in Japanese) | (See Japanese page) |
| Title (in English) | Implementation and Evaluation of Numerical Integrators on ReCSiP |
| Sub Title (in English) | |
| Keyword(1) | Biochemical Simulaton |
| Keyword(2) | Ordinary Differential Equations |
| Keyword(3) | Heun's Method |
| Keyword(4) | FPGA |
| 1st Author's Name | Yasunori OSANA |
| 1st Author's Affiliation | Department of Computer Science, Graduate School of Keio University() |
| 2nd Author's Name | Masato YOSHIMI |
| 2nd Author's Affiliation | Department of Computer Science, Graduate School of Keio University |
| 3rd Author's Name | Yow IWAOKA |
| 3rd Author's Affiliation | Department of Computer Science, Graduate School of Keio University |
| 4th Author's Name | Akira FUNAHASHI |
| 4th Author's Affiliation | Kitano Symbiotic Project, ERATO-SORST, Japan Science and Technology Agency |
| 5th Author's Name | Noriko HIROI |
| 5th Author's Affiliation | Kitano Symbiotic Project, ERATO-SORST, Japan Science and Technology Agency |
| 6th Author's Name | Yuichiro SHIBATA |
| 6th Author's Affiliation | Department of Computer and Information Scienecs, Nagasaki University |
| 7th Author's Name | Naoki IWANAGA |
| 7th Author's Affiliation | Department of Computer and Information Scienecs, Nagasaki University |
| 8th Author's Name | Hiroaki KITANO |
| 8th Author's Affiliation | Kitano Symbiotic Project, ERATO-SORST, Japan Science and Technology Agency |
| 9th Author's Name | Hideharu AMANO |
| 9th Author's Affiliation | Department of Computer Science, Graduate School of Keio University |
| Date | 2005-05-12 |
| Paper # | RECONF2005-9 |
| Volume (vol) | vol.105 |
| Number (no) | 42 |
| Page | pp.pp.- |
| #Pages | 6 |
| Date of Issue | |