| Presentation | 2005-05-12 Scheduling of Rate Law Functions for an FPGA-based Biochemical Simulator Naoki IWANAGA, Yuichiro SHIBATA, Masato YOSHIMI, Yasunori OSANA, Yow IWAOKA, Tomonori FUKUSHIMA, Hideharu AMANO, Akira FUNAHASHI, Noriko HIROI, Hiroaki KITANO, Kiyoshi OGURI, |
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| PDF Download Page |  PDF download Page Link |
| Abstract(in Japanese) | (See Japanese page) |
| Abstract(in English) | A reconfigurable biochemical simulator solving ordinary differential equations has received attention as a personal high speed environment for biochemical researchers. For efficient use of the reconfigurable hardware, static scheduling of high-throughput arithmetic pipeline structures is essential. This paper shows and compares some scheduling alternatives, and analyzes the tradeoffs between performance and hardware amount. Through the evaluation, it is shown that the sharing first scheduling reduces the hardware cost by 33.8% in average, with the up to 11.5% throughput degradation. Effects of sharing rate law functions are also analyzed. |
| Keyword(in Japanese) | (See Japanese page) |
| Keyword(in English) | biochemical simulator / ordinary differential equation / arithmetic scheduling |
| Paper # | RECONF2005-8 |
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| Conference Information | |
| Committee | RECONF |
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| Conference Date | 2005/5/5(1days) |
| Place (in Japanese) | (See Japanese page) |
| Place (in English) | |
| Topics (in Japanese) | (See Japanese page) |
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| Paper Information | |
| Registration To | Reconfigurable Systems (RECONF) |
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| Language | JPN |
| Title (in Japanese) | (See Japanese page) |
| Sub Title (in Japanese) | (See Japanese page) |
| Title (in English) | Scheduling of Rate Law Functions for an FPGA-based Biochemical Simulator |
| Sub Title (in English) | |
| Keyword(1) | biochemical simulator |
| Keyword(2) | ordinary differential equation |
| Keyword(3) | arithmetic scheduling |
| 1st Author's Name | Naoki IWANAGA |
| 1st Author's Affiliation | Dept. Computer and Information Sciences, Faculty of Engineering, Nagasaki University() |
| 2nd Author's Name | Yuichiro SHIBATA |
| 2nd Author's Affiliation | Dept. Computer and Information Sciences, Faculty of Engineering, Nagasaki University |
| 3rd Author's Name | Masato YOSHIMI |
| 3rd Author's Affiliation | Dept. Information and Computer Science, Faculty of Science and Technology, Keio University |
| 4th Author's Name | Yasunori OSANA |
| 4th Author's Affiliation | Dept. Information and Computer Science, Faculty of Science and Technology, Keio University |
| 5th Author's Name | Yow IWAOKA |
| 5th Author's Affiliation | Dept. Information and Computer Science, Faculty of Science and Technology, Keio University |
| 6th Author's Name | Tomonori FUKUSHIMA |
| 6th Author's Affiliation | Dept. Information and Computer Science, Faculty of Science and Technology, Keio University |
| 7th Author's Name | Hideharu AMANO |
| 7th Author's Affiliation | Dept. Information and Computer Science, Faculty of Science and Technology, Keio University |
| 8th Author's Name | Akira FUNAHASHI |
| 8th Author's Affiliation | Kitano Symbiotic Systems Project, ERATO-SORST, Japan Science and Technology Agency |
| 9th Author's Name | Noriko HIROI |
| 9th Author's Affiliation | Kitano Symbiotic Systems Project, ERATO-SORST, Japan Science and Technology Agency |
| 10th Author's Name | Hiroaki KITANO |
| 10th Author's Affiliation | Kitano Symbiotic Systems Project, ERATO-SORST, Japan Science and Technology Agency |
| 11th Author's Name | Kiyoshi OGURI |
| 11th Author's Affiliation | Dept. Computer and Information Sciences, Faculty of Engineering, Nagasaki University |
| Date | 2005-05-12 |
| Paper # | RECONF2005-8 |
| Volume (vol) | vol.105 |
| Number (no) | 42 |
| Page | pp.pp.- |
| #Pages | 6 |
| Date of Issue | |