| Presentation | 2005-01-25 Design of cellular simulation platform for SBML model Yow Iwaoka, Yasunori Osana, Tomonori Fukushima, Masato Yoshimi, Akira Hunahashi, Noriko Hiroi, Yuichiro Shibata, Naoki Iwanaga, Hiroaki Kitano, Hideharu Amano, |
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| PDF Download Page |  PDF download Page Link |
| Abstract(in Japanese) | (See Japanese page) |
| Abstract(in English) | Computer simulation in widely used in biochemistry research. However, simulating large-scale model requires a large computational time. To reduce it, we have been developing a FPGA-based high-speed simulator, but previous research mainly forcues on high speed implementation, and standard model for description has not been prepared. SBML model, that is a standard modeling language for biochemical networks, has been popular in many software simulator. In this reseach report, an environment of FPGA-based simulator which can use SBML for modeling is implemented and evaluated. |
| Keyword(in Japanese) | (See Japanese page) |
| Keyword(in English) | SBML / FPGA / Biochemical Simulation |
| Paper # | VLD2004-108,CPSY2004-74 |
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| Conference Information | |
| Committee | VLD |
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| Conference Date | 2005/1/18(1days) |
| Place (in Japanese) | (See Japanese page) |
| Place (in English) | |
| Topics (in Japanese) | (See Japanese page) |
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| Vice Chair | |
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| Paper Information | |
| Registration To | VLSI Design Technologies (VLD) |
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| Language | JPN |
| Title (in Japanese) | (See Japanese page) |
| Sub Title (in Japanese) | (See Japanese page) |
| Title (in English) | Design of cellular simulation platform for SBML model |
| Sub Title (in English) | |
| Keyword(1) | SBML |
| Keyword(2) | FPGA |
| Keyword(3) | Biochemical Simulation |
| 1st Author's Name | Yow Iwaoka |
| 1st Author's Affiliation | Faculty of Science and Technology, Keio University() |
| 2nd Author's Name | Yasunori Osana |
| 2nd Author's Affiliation | Graduate School of Science and Technology, Keio University |
| 3rd Author's Name | Tomonori Fukushima |
| 3rd Author's Affiliation | Graduate School of Science and Technology, Keio University |
| 4th Author's Name | Masato Yoshimi |
| 4th Author's Affiliation | Graduate School of Science and Technology, Keio University |
| 5th Author's Name | Akira Hunahashi |
| 5th Author's Affiliation | Kitano Symbiotic Systems Project, ERATO-SORST, Japan Science and Technology Agency |
| 6th Author's Name | Noriko Hiroi |
| 6th Author's Affiliation | Kitano Symbiotic Systems Project, ERATO-SORST, Japan Science and Technology Agency |
| 7th Author's Name | Yuichiro Shibata |
| 7th Author's Affiliation | Dept. of Computer and Information Sciences, Nagasaki University |
| 8th Author's Name | Naoki Iwanaga |
| 8th Author's Affiliation | Dept. of Computer and Information Sciences, Nagasaki University |
| 9th Author's Name | Hiroaki Kitano |
| 9th Author's Affiliation | Kitano Symbiotic Systems Project, ERATO-SORST, Japan Science and Technology Agency |
| 10th Author's Name | Hideharu Amano |
| 10th Author's Affiliation | Faculty of Science and Technology, Keio University |
| Date | 2005-01-25 |
| Paper # | VLD2004-108,CPSY2004-74 |
| Volume (vol) | vol.104 |
| Number (no) | 589 |
| Page | pp.pp.- |
| #Pages | 6 |
| Date of Issue | |