Presentation 2001/2/2
Learning Protein Structures and Expressing State Space using a Recurrent Neural Network
Shigeru SAITO, Hiroyuki SHIOYA, Tsutomu DA-TE,
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Abstract(in English) A Recurrent Neural Network(RNN)has reflexive structures and an ability of learning Finite State Machines(FSMs). It is known that a state graph of an FSM is extracted in the state space of the trained RNN optimally. In this paper, we use an RNN in order to learn protein secondary structures(alpha-helix and etc). We propose learning methods which reflect properties of protein structures and RNNs, and show that a grammatical structure of an amino acid sequence is acquired in the same way.
Keyword(in Japanese) (See Japanese page)
Keyword(in English) Recurrent Neural Network / state space / protein structures / α-helix
Paper # NC2000-94
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Committee NC
Conference Date 2001/2/2(1days)
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Registration To Neurocomputing (NC)
Language JPN
Title (in Japanese) (See Japanese page)
Sub Title (in Japanese) (See Japanese page)
Title (in English) Learning Protein Structures and Expressing State Space using a Recurrent Neural Network
Sub Title (in English)
Keyword(1) Recurrent Neural Network
Keyword(2) state space
Keyword(3) protein structures
Keyword(4) α-helix
1st Author's Name Shigeru SAITO
1st Author's Affiliation Graduate School of Engineering, Hokkaido University()
2nd Author's Name Hiroyuki SHIOYA
2nd Author's Affiliation Graduate School of Engineering, Hokkaido University
3rd Author's Name Tsutomu DA-TE
3rd Author's Affiliation Graduate School of Engineering, Hokkaido University
Date 2001/2/2
Paper # NC2000-94
Volume (vol) vol.100
Number (no) 618
Page pp.pp.-
#Pages 7
Date of Issue