Presentation 2003/5/16
Biological Simulation Environment Based on Object Oriented Paradigm
Tsukasa SHIBAYAMA, Toshifumi NISHI, Nobuaki SARAI, Satoshi MATSUOKA, Akira AMANO, Tetsuya MATSUDA, Akinori NOMA,
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Abstract(in English) Simulation of the biological systems are becoming important as they are expected to be used for the creation of new medicine and for understanding the mechanism of biological phenomena. The biological systems have hierarchical structures such as cells, tissues and organs, and they are involved with many phenomena such as the electrophysiological phenomenon and the mechanical dynamics. The environment for constructing such simulation systems should provide the function with which hierarchical systems can be realized naturally. In this paper, we propose the environment for constructing the biological simulation models. The system is based on object oriented paradigm for the natural description of the hierarchical models. An implementation of the cardiac cell model is explained to show the effectiveness of the system.
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Keyword(in English) Biological Simulation / Simulation Environment / Electrophysiology / Object Oriented Programming
Paper # MBE2003-5
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Committee MBE
Conference Date 2003/5/16(1days)
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Registration To ME and Bio Cybernetics (MBE)
Language JPN
Title (in Japanese) (See Japanese page)
Sub Title (in Japanese) (See Japanese page)
Title (in English) Biological Simulation Environment Based on Object Oriented Paradigm
Sub Title (in English)
Keyword(1) Biological Simulation
Keyword(2) Simulation Environment
Keyword(3) Electrophysiology
Keyword(4) Object Oriented Programming
1st Author's Name Tsukasa SHIBAYAMA
1st Author's Affiliation Graduate School of Informatics, Kyoto University()
2nd Author's Name Toshifumi NISHI
2nd Author's Affiliation Graduate School of Informatics, Kyoto University
3rd Author's Name Nobuaki SARAI
3rd Author's Affiliation Graduate School of Medicine,Kyoto University
4th Author's Name Satoshi MATSUOKA
4th Author's Affiliation Graduate School of Medicine,Kyoto University
5th Author's Name Akira AMANO
5th Author's Affiliation Graduate School of Informatics, Kyoto University
6th Author's Name Tetsuya MATSUDA
6th Author's Affiliation Graduate School of Informatics, Kyoto University
7th Author's Name Akinori NOMA
7th Author's Affiliation Graduate School of Medicine,Kyoto University
Date 2003/5/16
Paper # MBE2003-5
Volume (vol) vol.103
Number (no) 81
Page pp.pp.-
#Pages 6
Date of Issue