| Presentation | 2017-03-09 Near-data processing for genome analysis using software-controlled SSD Kuwamura, Shinya, Kazama, Satoshi, Yoshida, Eiji, Ogawa, Junji, Miyoshi, Takashi, Noguchi, Yasuo, |
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| PDF Download Page |  PDF download Page Link |
| Abstract(in Japanese) | (See Japanese page) |
| Abstract(in English) | Recently, a sort of near-data processing is a hot topic, in order to reduce data transfer cost and get higher system performances. We implemented multiple processing units in a software-controlled PCIe card SSD to aggregate gene variants in a genome analysis database. Our proposed method achieves 1.4 times faster than that of conventional methods, which basically fetch data from a SSD database to main memory and process genome analysis with multiple CPU. Consequently, to use three PCIe card SSDs has a possibility to overcome even in-memory processing performance, with which all data is prepared in main memory. |
| Keyword(in Japanese) | (See Japanese page) |
| Keyword(in English) | Near-data processing / SSD / FPGA / Flash memory / Genome / Software-controlled SSD |
| Paper # | CPSY2016-139,DC2016-85 |
| Date of Issue | 2017-03-02 (CPSY, DC) |
| Conference Information | |
| Committee | CPSY / DC / IPSJ-SLDM / IPSJ-EMB / IPSJ-ARC |
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| Conference Date | 2017/3/9(2days) |
| Place (in Japanese) | (See Japanese page) |
| Place (in English) | Kumejima Island |
| Topics (in Japanese) | (See Japanese page) |
| Topics (in English) | ETNET20167 |
| Chair | Yasuhiko Nakashima(NAIST) / Michiko Inoue(NAIST) / Kiyoharu Hamaguchi(Shimane Univ.) |
| Vice Chair | Koji Nakano(Hiroshima Univ.) / Hidetsugu Irie(Univ. of Tokyo) / Satoshi Fukumoto(Tokyo Metropolitan Univ.) |
| Secretary | Koji Nakano(Fujitsu Labs.) / Hidetsugu Irie(NII) / Satoshi Fukumoto(Kyoto Sangyo Univ.) / (Tokyo Inst. of Tech.) / (Toshiba) / (Univ. of Kitakyushu) |
| Assistant | Takeshi Ohkawa(Utsunomiya Univ.) / Shinya Takameda(Hokkaido Univ.) |
| Paper Information | |
| Registration To | Technical Committee on Computer Systems / Technical Committee on Dependable Computing / Special Interest Group on System and LSI Design Methodology / Special Interest Group on Embedded Systems / Special Interest Group on System Architecture |
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| Language | JPN |
| Title (in Japanese) | (See Japanese page) |
| Sub Title (in Japanese) | (See Japanese page) |
| Title (in English) | Near-data processing for genome analysis using software-controlled SSD |
| Sub Title (in English) | |
| Keyword(1) | Near-data processing |
| Keyword(2) | SSD |
| Keyword(3) | FPGA |
| Keyword(4) | Flash memory |
| Keyword(5) | Genome |
| Keyword(6) | Software-controlled SSD |
| 1st Author's Name | Kuwamura, Shinya |
| 1st Author's Affiliation | Fujitsu Laboratories Ltd.(Fujitsu Labs.) |
| 2nd Author's Name | Kazama, Satoshi |
| 2nd Author's Affiliation | Fujitsu Laboratories Ltd.(Fujitsu Labs.) |
| 3rd Author's Name | Yoshida, Eiji |
| 3rd Author's Affiliation | Fujitsu Laboratories Ltd.(Fujitsu Labs.) |
| 4th Author's Name | Ogawa, Junji |
| 4th Author's Affiliation | Fujitsu Laboratories Ltd.(Fujitsu Labs.) |
| 5th Author's Name | Miyoshi, Takashi |
| 5th Author's Affiliation | Fujitsu Laboratories Ltd.(Fujitsu Labs.) |
| 6th Author's Name | Noguchi, Yasuo |
| 6th Author's Affiliation | Fujitsu Laboratories Ltd.(Fujitsu Labs.) |
| Date | 2017-03-09 |
| Paper # | CPSY2016-139,DC2016-85 |
| Volume (vol) | vol.116 |
| Number (no) | CPSY-510,DC-511 |
| Page | pp.pp.45-50(CPSY), pp.45-50(DC), |
| #Pages | 6 |
| Date of Issue | 2017-03-02 (CPSY, DC) |