Committee |
Date Time |
Place |
Paper Title / Authors |
Abstract |
Paper # |
VLD, DC, IPSJ-SLDM, CPSY, RECONF, ICD, CPM (Joint) [detail] |
2011-11-29 09:50 |
Miyazaki |
NewWelCity Miyazaki |
A good similarity of a datapath classification method for FPGA-based accelerator systems Yui Ogawa (Nagasaki Univ.), Yasunori Osana (Ryukyu Univ.), Masato Yoshimi (Doshisha Univ.), Akira Funahashi, Noriko Hiroi, Hideharu Amano (Keio Univ.), Yuichiro Shibata, Kiyoshi Oguri (Nagasaki Univ.) RECONF2011-46 |
[more] |
RECONF2011-46 pp.31-36 |
RECONF |
2010-05-13 16:45 |
Nagasaki |
|
A datapath classification method for efficient arithmetic pipeline combining on FPGAs Yui Ogawa, Tomonori Ooya (Nagasaki Univ.), Yasunori Osana (Seikei Univ.), Masato Yoshimi (Doshisha Univ.), Yuri Nishikawa, Akira Funahashi, Noriko Hiroi, Hideharu Amano (Keio Univ.), Yuichiro Shibata, Kiyoshi Oguri (Nagasaki Univ.) RECONF2010-8 |
[more] |
RECONF2010-8 pp.43-48 |
RECONF |
2009-05-14 16:10 |
Fukui |
|
Performance evaluation of an auto-generation algorithm of hardware modules for an FPGA-based general-purpose biochemical simulator Tomonori Ooya, Hideki Yamada, Tomoya Ishimori, Yuichiro Shibata (Nagasaki Univ), Yasunori Osana (Seikei Univ), Masato Yoshimi (Doshisha Univ), Yuri Nishikawa, Hideharu Amano, Akira Funahashi, Noriko Hiroi (Keio Univ), Kiyoshi Oguri (Nagasaki Univ) RECONF2009-7 |
One of the obvious advantages of FPGA-based reconfigurable computing is customizability of a tradeoff point between perf... [more] |
RECONF2009-7 pp.37-42 |
RECONF |
2008-09-25 14:30 |
Okayama |
Okayama Univ. |
An automatic combine algorithm of arithmetic pipelines for an FPGA-based biochemical simulator focused on similarities of rate law functions Hideki Yamada, Tomoya Ishimori, Yuichiro Shibata (Nagasaki Univ.), Yasunori Osana, Masato Yoshimi, Yuri Nishikawa, Hideharu Amano, Akira Funahashi (Keio Univ.), Noriko Hiroi (EMBL-EBI), Kiyoshi Oguri (Nagasaki Univ.) RECONF2008-26 |
[more] |
RECONF2008-26 pp.21-26 |
RECONF |
2008-05-23 14:25 |
Fukushima |
The University of Aizu |
Pipeline Scheduling with Input Port Constraints for an FPGA-based Biochemical Simulator Tomoya Ishimori, Hideki Yamada, Yuichiro Shibata (Nagasaki Univ.), Yasunori Osana, Masato Yoshimi, Yuri Nishikawa, Toshinori Kojima, Hideharu Amano, Akira Funahashi (Keio Univ.), Noriko Hiroi (EMPL-EBI), Kiyoshi Oguri (Nagasaki Univ.) RECONF2008-20 |
[more] |
RECONF2008-20 pp.113-118 |
VLD, CPSY, RECONF, DC, IPSJ-SLDM, IPSJ-ARC (Joint) [detail] |
2007-11-22 13:25 |
Fukuoka |
Kitakyushu International Conference Center |
Evaluation of a Data-Driven Architecture for a Stochastic Biochemical Simulator on an FPGA Masato Yoshimi, Yuri Nishikawa, Toshinori Kojima, Yasunori Osana, Akira Funahashi (Keio Univ.), Noriko Hiroi (EMBL-EBI), Yuichiro Shibata, Hideki Yamada (Nagasaki Univ.), Hiroaki Kitano (JST), Hideharu Amano (Keio Univ.) RECONF2007-50 |
This paper studies several designs of network-based FPGA implementation of a stochastic simulation algorithm called the ... [more] |
RECONF2007-50 pp.43-48 |
RECONF |
2007-09-21 14:00 |
Shiga |
Ritsumeikan Univ. Biwako Kusatsu Campus (Shiga) |
Proposal and Evaluation of the Network-based Stochastic Biochemical Simulator on an FPGA Masato Yoshimi, Yuri Nishikawa, Toshinori Kojima, Yasunori Osana, Akira Funahashi (Keio Univ.), Noriko Hiroi (EMBL-EBI), Yuichiro Shibata, Hideki Yamada (Nagasaki Univ.), Hiroaki Kitano (JST), Hideharu Amano (Keio Univ.) |
(Advance abstract in Japanese is available) [more] |
|
RECONF |
2007-05-17 14:00 |
Ishikawa |
Kanazawa Bunka Hall |
Autometic combining of rate law functions for an FPGA-based biochemical simulator ReCSiP Hideki Yamada, Naoki Iwanaga, Yuichiro Shibata (Nagasaki Univ.), Yasunori Osana, Masato Yoshimi, Yow Iwaoka, Yuri Nishikawa, Toshinori Kojima, Hideharu Amano, Akira Funahashi (Keio Univ.), Noriko Hiroi (EMBL-EBI), Hiroaki Kitano (JST), Kiyoshi Oguri (Nagasaki Univ.) RECONF2007-3 |
In order to simulate large scale biological models with a reconfigurable FPGA-based biochemical simulator system, reduct... [more] |
RECONF2007-3 pp.13-18 |
RECONF |
2006-05-18 17:30 |
Miyagi |
TOHOKU UNIVERSITY |
Implementation and Evaluation of General-Purpose Host Interface on ReCSiP Board Toshinori Kojima, Yasunori Osana, Masato Yoshimi, Yow Iwaoka, Yuri Nishikawa (Keio Univ.), Akira Funahashi, Noriko Hiroi (JST), Yuichiro Shibata, Naoki Iwanaga (Nagasaki Univ.), Hiroaki Kitano (JST), Hideharu Amano (Keio Univ.) |
[more] |
RECONF2006-10 pp.55-60 |
RECONF, CPSY, VLD, IPSJ-SLDM |
2006-01-18 14:55 |
Kanagawa |
|
A Stochastic Biochemical Simulator with a Data-transfer Network on an FPGA Masato Yoshimi, Yasunori Osana, Yow Iwaoka, Yuri Nishikawa, Toshinori Kojima (Keio Univ.), Akira Funahashi, Noriko Hiroi (JST), Yuichiro Shibata, Naoki Iwanaga (Nagasaki Univ.), Hiroaki Kitano (JST), Hideharu Amano (Keio Univ.) |
A high-perfomance biochemical simulatior using a reconfigurable system draws attention as a low-cost solution from biolo... [more] |
VLD2005-105 CPSY2005-61 RECONF2005-94 pp.47-52 |
RECONF, CPSY, VLD, IPSJ-SLDM |
2006-01-18 15:20 |
Kanagawa |
|
A Performance Improvement Strategy for Numerical Integration on an FPGA-Based Biochemical Simulator ReCSiP Yuri Nishikawa, Yasunori Osana, Masato Yoshimi, Yow Iwaoka, Toshinori Kojima (Keio Univ.), Akira Funahashi, Noriko Hiroi (JST), Yuichiro Shibata, Naoki Iwanaga (Nagasaki Univ.), Hiroaki Kitano (JST), Hideharu Amano (Keio Univ.) |
Computational simulation is a highly effective solution for cellular analyses in recent bioinformatics. As the scale of... [more] |
VLD2005-106 CPSY2005-62 RECONF2005-95 pp.53-58 |
RECONF, CPSY, VLD, IPSJ-SLDM |
2006-01-18 15:45 |
Kanagawa |
|
Hardware-resource Utilization Analysis on an FPGA-Based Biochemical Simulator ReCSiP Yasunori Osana (Keio Univ.), Naoki Iwanaga (Nagasaki Univ.), Masato Yoshimi, Yow Iwaoka, Toshinori Kojima, Yuri Nishikawa (Keio Univ.), Akira Funahashi (JST), Noriko Hiroi (Keio Univ.), Yuichiro Shibata, Hiroaki Kitano (Nagasaki Univ.), Hideharu Amano (Keio Univ.) |
(Advance abstract in Japanese is available) [more] |
VLD2005-107 CPSY2005-63 RECONF2005-96 pp.59-64 |
RECONF |
2005-09-15 16:15 |
Hiroshima |
|
Control Mechanism of the FPGA-Based Biochemical Simulator ReCSiP Yasunori Osana, Masato Yoshimi, Yow Iwaoka, Toshinori Kojima, Yuri Nishikawa (Keio Univ.), Akira Funahashi, Noriko Hiroi (JST), Yuichiro Shibata, Naoki Iwanaga (Nagasaki Univ.), Hiroaki Kitano (JST), Hideharu Amano (Keio Univ.) |
[more] |
RECONF2005-39 pp.55-60 |
RECONF |
2005-09-15 16:45 |
Hiroshima |
|
Building of the SBML System for an FPGA-based Biochemical Simulator Yow Iwaoka, Yasunori Osana, Masato Yoshimi, Toshinori Kojima, Yuri Nishikawa (Keio Univ.), Akira Funahashi, Noriko Hiroi (JST), Yuichiro Shibata, Naoki Iwanaga (Nagasaki Univ.), Hiroaki Kitano (JST), Hideharu Amano (Keio Univ.) |
Today, there are many simulators which simulates biochemical
reactions. And an FPGA based simulator was developed becau... [more] |
RECONF2005-40 pp.61-66 |
RECONF |
2005-05-12 14:00 |
Kyoto |
Kyoto University |
Design of a Heap-tree Based Scalable Stochastic Biochemical Simulator on an FPGA Masato Yoshimi, Yasunori Osana, Yow Iwaoka, Tomonori Fukushima (Keio Univ.), Akira Funahashi, Noriko Hiroi (JST), Yuichiro Shibata, Naoki Iwanaga (Nagasaki Univ.), Hiroaki Kitano (JST), Hideharu Amano (Keio Univ.) |
[more] |
RECONF2005-7 pp.37-42 |
RECONF |
2005-05-12 14:30 |
Kyoto |
Kyoto University |
Scheduling of Rate Law Functions for an FPGA-based Biochemical Simulator Naoki Iwanaga, Yuichiro Shibata (Nagasaki Univ.), Masato Yoshimi, Yasunori Osana, Yow Iwaoka, Tomonori Fukushima, Hideharu Amano (Keio Univ), Akira Funahashi, Noriko Hiroi, Hiroaki Kitano (JST), Kiyoshi Oguri (Nagasaki Univ.) |
A reconfigurable biochemical simulator solving ordinary differential
equations has received attention as a personal hig... [more] |
RECONF2005-8 pp.43-48 |
RECONF |
2005-05-12 15:00 |
Kyoto |
Kyoto University |
Implementation and Evaluation of Numerical Integrators on ReCSiP Yasunori Osana, Masato Yoshimi, Yow Iwaoka (Keio Univ.), Akira Funahashi, Noriko Hiroi (ERATO-SORST), Yuichiro Shibata, Naoki Iwanaga (Nagasaki Univ.), Hiroaki Kitano (ERATO-SORST), Hideharu Amano (Keio Univ.) |
[more] |
RECONF2005-9 pp.49-54 |
CPSY, VLD, IPSJ-SLDM |
2005-01-25 16:20 |
Kanagawa |
|
Design of cellular simulation platform for SBML model Yow Iwaoka, Yasunori Osana, Tomonori Fukushima, Masato Yoshimi (Keio Univ.), Akira Funahashi, Noriko Hiroi (JST), Yuichiro Shibata, Naoki Iwanaga (Nagasaki Univ.), Hiroaki Kitano (JST), Hideharu Amano (Keio Univ.) |
Computer simulation in widely used in biochemistry research.
However, simulating large-scale model requires a large com... [more] |
VLD2004-108 CPSY2004-74 pp.63-68 |
|