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| Presentation | 2020-01-30 15:00 [Short Paper] 3D Brain Atlas Construction from Single Japanese Cadaver Brain Yota Noda, Ken'ichi Morooka (Kyushu Univ.), Yasushi Miyagi (Fukuoka Mirai Hospital), Takaichi Fukuda (Kumamoto Univ.), Shoko Miyauchi, Ryo Kurazume (Kyushu Univ.)  MI2019-119 |
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| Abstract | (in Japanese) | (See Japanese page) |
| (in English) | We have been constructing the 3D brain atlas from a single Japanese cadaver brain. In constructing the atlas, a 3D digitizer is used to generate the surface model of a cadaver brain (called ``reference model''). The cadaver brain is cut into blocks with 1[cm] thick, and each block is sliced into serial slices with 100[$mu$m] thick. The contours of the surface and internal structures of the brain in each slice are extracted manually. The block model is generated by collecting the contours. The 3D brain atlas is obtained by aligning and integrating all the blocks. Here, although the reference model has all the accurate convex shapes, its concave shapes have much noise. On the other hand, the block model has the reliable whole shapes because of the manual shape extraction. However, some parts of the block contain shape deformation caused by the cutting and slicing processes. Considering the characteristics of the two models, we propose a non-rigid registration for the reference and block models to fit the convex surfaces of the block model to those of the reference model while keeping the concave shapes of the block model. From our experiments, the proposed method achieves a reliable registration of the reference and block models. |
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| Keyword | (in Japanese) | (See Japanese page) |
| (in English) | Brain atlas / Non-rigid registration / Free-Form Deformation / Mesh model / / / / | |
| Reference Info. | IEICE Tech. Rep., vol. 119, no. 399, MI2019-119, pp. 231-234, Jan. 2020. | |
| Paper # | MI2019-119 | |
| Date of Issue | 2020-01-22 (MI) | |
| ISSN | Online edition: ISSN 2432-6380 | |
| Copyright and reproduction |
All rights are reserved and no part of this publication may be reproduced or transmitted in any form or by any means, electronic or mechanical, including photocopy, recording, or any information storage and retrieval system, without permission in writing from the publisher. Notwithstanding, instructors are permitted to photocopy isolated articles for noncommercial classroom use without fee. (License No.: 10GA0019/12GB0052/13GB0056/17GB0034/18GB0034) | |
| Download PDF | MI2019-119 |
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| Conference Information | |
| Committee | MI |
| Conference Date | 2020-01-29 - 2020-01-30 |
| Place (in Japanese) | (See Japanese page) |
| Place (in English) | OKINAWAKEN SEINENKAIKAN |
| Topics (in Japanese) | (See Japanese page) |
| Topics (in English) | Medical Image Engineering, Analysis, Recognition, etc. |
| Paper Information | |
| Registration To | MI |
| Conference Code | 2020-01-MI |
| Language | Japanese |
| Title (in Japanese) | (See Japanese page) |
| Sub Title (in Japanese) | (See Japanese page) |
| Title (in English) | 3D Brain Atlas Construction from Single Japanese Cadaver Brain |
| Sub Title (in English) | |
| Keyword(1) | Brain atlas |
| Keyword(2) | Non-rigid registration |
| Keyword(3) | Free-Form Deformation |
| Keyword(4) | Mesh model |
| Keyword(5) | |
| Keyword(6) | |
| Keyword(7) | |
| Keyword(8) | |
| 1st Author's Name | Yota Noda |
| 1st Author's Affiliation | Kyushu University (Kyushu Univ.) |
| 2nd Author's Name | Ken'ichi Morooka |
| 2nd Author's Affiliation | Kyushu University (Kyushu Univ.) |
| 3rd Author's Name | Yasushi Miyagi |
| 3rd Author's Affiliation | Fukuoka Mirai Hospital (Fukuoka Mirai Hospital) |
| 4th Author's Name | Takaichi Fukuda |
| 4th Author's Affiliation | Kumamoto University (Kumamoto Univ.) |
| 5th Author's Name | Shoko Miyauchi |
| 5th Author's Affiliation | Kyushu University (Kyushu Univ.) |
| 6th Author's Name | Ryo Kurazume |
| 6th Author's Affiliation | Kyushu University (Kyushu Univ.) |
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| Speaker | Author-1 |
| Date Time | 2020-01-30 15:00:00 |
| Presentation Time | 10 minutes |
| Registration for | MI |
| Paper # | MI2019-119 |
| Volume (vol) | vol.119 |
| Number (no) | no.399 |
| Page | pp.231-234 |
| #Pages | 4 |
| Date of Issue | 2020-01-22 (MI) |
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