Paper Abstract and Keywords |
Presentation |
2017-03-09 15:50
Near-data processing for genome analysis using software-controlled SSD Kuwamura, Shinya, Kazama, Satoshi, Yoshida, Eiji, Ogawa, Junji, Miyoshi, Takashi, Noguchi, Yasuo (Fujitsu Labs.) CPSY2016-139 DC2016-85 |
Abstract |
(in Japanese) |
(See Japanese page) |
(in English) |
Recently, a sort of near-data processing is a hot topic, in order to reduce data transfer cost and get higher system performances.
We implemented multiple processing units in a software-controlled PCIe card SSD to aggregate gene variants in a genome analysis database.
Our proposed method achieves 1.4 times faster than that of conventional methods, which basically fetch data from a SSD database to main memory and process genome analysis with multiple CPU.
Consequently, to use three PCIe card SSDs has a possibility to overcome even in-memory processing performance, with which all data is prepared in main memory. |
Keyword |
(in Japanese) |
(See Japanese page) |
(in English) |
Near-data processing / SSD / FPGA / Flash memory / Genome / Software-controlled SSD / / |
Reference Info. |
IEICE Tech. Rep., vol. 116, no. 510, CPSY2016-139, pp. 45-50, March 2017. |
Paper # |
CPSY2016-139 |
Date of Issue |
2017-03-02 (CPSY, DC) |
ISSN |
Print edition: ISSN 0913-5685 Online edition: ISSN 2432-6380 |
Copyright and reproduction |
All rights are reserved and no part of this publication may be reproduced or transmitted in any form or by any means, electronic or mechanical, including photocopy, recording, or any information storage and retrieval system, without permission in writing from the publisher. Notwithstanding, instructors are permitted to photocopy isolated articles for noncommercial classroom use without fee. (License No.: 10GA0019/12GB0052/13GB0056/17GB0034/18GB0034) |
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CPSY2016-139 DC2016-85 |
Conference Information |
Committee |
CPSY DC IPSJ-SLDM IPSJ-EMB IPSJ-ARC |
Conference Date |
2017-03-09 - 2017-03-10 |
Place (in Japanese) |
(See Japanese page) |
Place (in English) |
Kumejima Island |
Topics (in Japanese) |
(See Japanese page) |
Topics (in English) |
ETNET20167 |
Paper Information |
Registration To |
CPSY |
Conference Code |
2017-03-CPSY-DC-SLDM-EMB-ARC |
Language |
Japanese |
Title (in Japanese) |
(See Japanese page) |
Sub Title (in Japanese) |
(See Japanese page) |
Title (in English) |
Near-data processing for genome analysis using software-controlled SSD |
Sub Title (in English) |
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Keyword(1) |
Near-data processing |
Keyword(2) |
SSD |
Keyword(3) |
FPGA |
Keyword(4) |
Flash memory |
Keyword(5) |
Genome |
Keyword(6) |
Software-controlled SSD |
Keyword(7) |
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Keyword(8) |
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1st Author's Name |
Kuwamura, Shinya |
1st Author's Affiliation |
Fujitsu Laboratories Ltd. (Fujitsu Labs.) |
2nd Author's Name |
Kazama, Satoshi |
2nd Author's Affiliation |
Fujitsu Laboratories Ltd. (Fujitsu Labs.) |
3rd Author's Name |
Yoshida, Eiji |
3rd Author's Affiliation |
Fujitsu Laboratories Ltd. (Fujitsu Labs.) |
4th Author's Name |
Ogawa, Junji |
4th Author's Affiliation |
Fujitsu Laboratories Ltd. (Fujitsu Labs.) |
5th Author's Name |
Miyoshi, Takashi |
5th Author's Affiliation |
Fujitsu Laboratories Ltd. (Fujitsu Labs.) |
6th Author's Name |
Noguchi, Yasuo |
6th Author's Affiliation |
Fujitsu Laboratories Ltd. (Fujitsu Labs.) |
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Speaker |
Author-1 |
Date Time |
2017-03-09 15:50:00 |
Presentation Time |
20 minutes |
Registration for |
CPSY |
Paper # |
CPSY2016-139, DC2016-85 |
Volume (vol) |
vol.116 |
Number (no) |
no.510(CPSY), no.511(DC) |
Page |
pp.45-50 |
#Pages |
6 |
Date of Issue |
2017-03-02 (CPSY, DC) |
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