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| Presentation | 2014-01-27 10:50 Distortion correction and synthesis of 2D histology images of brain tumor using macro images Toru Tanaka, Takashi Ohnishi (Chiba Univ.), Yukako Yagi, Noriaki Hashimoto (MGH/HMS), Jennie Taylor (MGH), Matija Snuderl (NYU), Hideaki Haneishi (Chiba Univ.)  MI2013-96 |
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| Abstract | (in Japanese) | (See Japanese page) |
| (in English) | For detailed analysis and diagnosis of glioblastoma (GBM), it is required to compare pathological images with MR images on the same regions to analyze their relationship. As a first step to this end, we propose a processing flow for obtaining a large pathology image of a brain slice. The process includes cutout from a deceased whole brain into several blocks, whole slide imaging of thin slice of those blocks and merge of those images without distortion. In this paper, we describe a series of image merging techniques. Several slice images are first merged in a way that the corresponding edges connect each other, and then the obtained large image is deformed by thin plate spline so as to match to a macro image of the corresponding brain section taken by an optical camera. An experiment result shows that a merged histology image similar to the shape of the macro image is obtained. | |
| Keyword | (in Japanese) | (See Japanese page) |
| (in English) | Whole Slide Imaging / Glioblastoma / Registration / Thin Plate Spline / / / / | |
| Reference Info. | IEICE Tech. Rep., vol. 113, no. 410, MI2013-96, pp. 219-224, Jan. 2014. | |
| Paper # | MI2013-96 | |
| Date of Issue | 2014-01-19 (MI) | |
| ISSN | Print edition: ISSN 0913-5685 Online edition: ISSN 2432-6380 | |
| Copyright and reproduction |
All rights are reserved and no part of this publication may be reproduced or transmitted in any form or by any means, electronic or mechanical, including photocopy, recording, or any information storage and retrieval system, without permission in writing from the publisher. Notwithstanding, instructors are permitted to photocopy isolated articles for noncommercial classroom use without fee. (License No.: 10GA0019/12GB0052/13GB0056/17GB0034/18GB0034) | |
| Download PDF | MI2013-96 |
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| Conference Information | |
| Committee | MI |
| Conference Date | 2014-01-26 - 2014-01-27 |
| Place (in Japanese) | (See Japanese page) |
| Place (in English) | Bunka Tenbusu Kan |
| Topics (in Japanese) | (See Japanese page) |
| Topics (in English) | Computer Assisted Diagnosis and Therapy Based on Computational Anatomy, etc. |
| Paper Information | |
| Registration To | MI |
| Conference Code | 2014-01-MI |
| Language | Japanese |
| Title (in Japanese) | (See Japanese page) |
| Sub Title (in Japanese) | (See Japanese page) |
| Title (in English) | Distortion correction and synthesis of 2D histology images of brain tumor using macro images |
| Sub Title (in English) | |
| Keyword(1) | Whole Slide Imaging |
| Keyword(2) | Glioblastoma |
| Keyword(3) | Registration |
| Keyword(4) | Thin Plate Spline |
| Keyword(5) | |
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| Keyword(8) | |
| 1st Author's Name | Toru Tanaka |
| 1st Author's Affiliation | Chiba University (Chiba Univ.) |
| 2nd Author's Name | Takashi Ohnishi |
| 2nd Author's Affiliation | Chiba University (Chiba Univ.) |
| 3rd Author's Name | Yukako Yagi |
| 3rd Author's Affiliation | Massachusetts General Hospital/Harvard Medical School (MGH/HMS) |
| 4th Author's Name | Noriaki Hashimoto |
| 4th Author's Affiliation | Massachusetts General Hospital/Harvard Medical School (MGH/HMS) |
| 5th Author's Name | Jennie Taylor |
| 5th Author's Affiliation | Massachusetts General Hospital (MGH) |
| 6th Author's Name | Matija Snuderl |
| 6th Author's Affiliation | New York University (NYU) |
| 7th Author's Name | Hideaki Haneishi |
| 7th Author's Affiliation | Chiba University (Chiba Univ.) |
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| Speaker | Author-1 |
| Date Time | 2014-01-27 10:50:00 |
| Presentation Time | 15 minutes |
| Registration for | MI |
| Paper # | MI2013-96 |
| Volume (vol) | vol.113 |
| Number (no) | no.410 |
| Page | pp.219-224 |
| #Pages | 6 |
| Date of Issue | 2014-01-19 (MI) |
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