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| Presentation | 2013-03-13 15:35 Analysis of DNA sequences using Self-Organizing Maps based on probe frequences Yutaro Kaneko, Hiroshi Dozono (Saga Univ.)  NC2012-150 |
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| Abstract | (in Japanese) | (See Japanese page) |
| (in English) | Recently, the next generation sequencers produce the large amount of sequence information of DNA. Thus, it becomes problem to extract the relevant information from whole information. In this study, it is intended to efficiently extract a variety of information hidden in DNA sequence using Self Organizing Maps, which can visualize the multi-dimensional data on the two dimensional plane. The input data of SOM is converted as the probe frequency data to extract the global features of whole sequences. SOM based on the computer generated hologram is used for the clustering of probe maps of DNA sequences. The experiments of classification for the DNA sequence of some species and some metabolic functions are conducted. | |
| Keyword | (in Japanese) | (See Japanese page) |
| (in English) | Self Organizing Map / DNA probe / next generation sequencing / / / / / | |
| Reference Info. | IEICE Tech. Rep., vol. 112, no. 480, NC2012-150, pp. 95-100, March 2013. | |
| Paper # | NC2012-150 | |
| Date of Issue | 2013-03-06 (NC) | |
| ISSN | Print edition: ISSN 0913-5685 Online edition: ISSN 2432-6380 | |
| Copyright and reproduction |
All rights are reserved and no part of this publication may be reproduced or transmitted in any form or by any means, electronic or mechanical, including photocopy, recording, or any information storage and retrieval system, without permission in writing from the publisher. Notwithstanding, instructors are permitted to photocopy isolated articles for noncommercial classroom use without fee. (License No.: 10GA0019/12GB0052/13GB0056/17GB0034/18GB0034) | |
| Download PDF | NC2012-150 |
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| Conference Information | |
| Committee | MBE NC |
| Conference Date | 2013-03-13 - 2013-03-15 |
| Place (in Japanese) | (See Japanese page) |
| Place (in English) | Tamagawa University |
| Topics (in Japanese) | (See Japanese page) |
| Topics (in English) | |
| Paper Information | |
| Registration To | NC |
| Conference Code | 2013-03-MBE-NC |
| Language | Japanese |
| Title (in Japanese) | (See Japanese page) |
| Sub Title (in Japanese) | (See Japanese page) |
| Title (in English) | Analysis of DNA sequences using Self-Organizing Maps based on probe frequences |
| Sub Title (in English) | |
| Keyword(1) | Self Organizing Map |
| Keyword(2) | DNA probe |
| Keyword(3) | next generation sequencing |
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| 1st Author's Name | Yutaro Kaneko |
| 1st Author's Affiliation | Saga University (Saga Univ.) |
| 2nd Author's Name | Hiroshi Dozono |
| 2nd Author's Affiliation | Saga University (Saga Univ.) |
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| Speaker | Author-1 |
| Date Time | 2013-03-13 15:35:00 |
| Presentation Time | 25 minutes |
| Registration for | NC |
| Paper # | NC2012-150 |
| Volume (vol) | vol.112 |
| Number (no) | no.480 |
| Page | pp.95-100 |
| #Pages | 6 |
| Date of Issue | 2013-03-06 (NC) |
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