| Paper Abstract and Keywords |
| Presentation |
2005-01-27 10:00
A New Proposal of Petri Net Based Formulation for Analyzing Signaling Pathways
Chen Li, Shunichi Suzuki, Qi-Wei Ge, Mitsuru Nakata, Hiroshi Matsuno (Yamaguchi Univ.), Satoru Miyano (Univ. of Tokyo) |
| Abstract |
(in Japanese) |
(See Japanese page) |
| (in English) |
In this research, we propose a new method for formulating and analyzing a signaling pathway with a focus on enzymes by applying Petri nets. In order to represent the properties of enzymes explicitly, we introduce a new notation “enzyme place” in the Petri net model. With enzyme places, we can give more natural description of signaling pathways than existing methods. Our method effectively finds basic enzymic components of a signaling pathway by employing T-invariants of Petri nets. This paper demonstrates how our method can be used in formulating and analyzing signaling pathways with an example of Interleukin-3 signaling pathway. |
| Keyword |
(in Japanese) |
(See Japanese page) |
| (in English) |
petri net / elementary T-invariant / signaling pathway / modeling / enzyme reaction / / / |
| Reference Info. |
IEICE Tech. Rep., vol. 104, Jan. 2005. |
| Paper # |
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| Date of Issue |
2005-01-20 (CST) |
| ISSN |
Print edition: ISSN 0913-5685 |
| Download PDF |
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| Conference Information |
| Committee |
MSS |
| Conference Date |
2005-01-27 - 2005-01-27 |
| Place (in Japanese) |
(See Japanese page) |
| Place (in English) |
Univ. of Electro-Communications |
| Topics (in Japanese) |
(See Japanese page) |
| Topics (in English) |
Concurrent system, etc. |
| Paper Information |
| Registration To |
MSS |
| Conference Code |
2005-01-CST |
| Language |
English (Japanese title is available) |
| Title (in Japanese) |
(See Japanese page) |
| Sub Title (in Japanese) |
(See Japanese page) |
| Title (in English) |
A New Proposal of Petri Net Based Formulation for Analyzing Signaling Pathways |
| Sub Title (in English) |
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| Keyword(1) |
petri net |
| Keyword(2) |
elementary T-invariant |
| Keyword(3) |
signaling pathway |
| Keyword(4) |
modeling |
| Keyword(5) |
enzyme reaction |
| Keyword(6) |
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| 1st Author's Name |
Chen Li |
| 1st Author's Affiliation |
Yamaguchi University (Yamaguchi Univ.) |
| 2nd Author's Name |
Shunichi Suzuki |
| 2nd Author's Affiliation |
Yamaguchi University (Yamaguchi Univ.) |
| 3rd Author's Name |
Qi-Wei Ge |
| 3rd Author's Affiliation |
Yamaguchi University (Yamaguchi Univ.) |
| 4th Author's Name |
Mitsuru Nakata |
| 4th Author's Affiliation |
Yamaguchi University (Yamaguchi Univ.) |
| 5th Author's Name |
Hiroshi Matsuno |
| 5th Author's Affiliation |
Yamaguchi University (Yamaguchi Univ.) |
| 6th Author's Name |
Satoru Miyano |
| 6th Author's Affiliation |
University of Tokyo (Univ. of Tokyo) |
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| Speaker |
Author-1 |
| Date Time |
2005-01-27 10:00:00 |
| Presentation Time |
25 minutes |
| Registration for |
MSS |
| Paper # |
CST2004-39 |
| Volume (vol) |
vol.104 |
| Number (no) |
no.593 |
| Page |
pp.1-6 |
| #Pages |
6 |
| Date of Issue |
2005-01-20 (CST) |